Yes, either Windows or Unix file systems paths can be used based on the installed platform. The file system crawler will index all sub-directories unless you specify sub-directory paths in the Disallow Path to avoid indexing that sub-directory.
Examples :
Directory Path and Allow Paths can be provided as follows:
Unix
/web/html/search/content/
Windows
c:\webroot\html\search\content\
Disallow Paths can be provided as follows:
Unix
/do not index/
Windows
C:\\path1\\html2\\.*
To learn more on File collection read: File Collection in SearchBlox
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